convertByAnnotationDB: Map indexes using Annotation DB

In ctlab/phantasus: Visual and interactive gene expression analysis

Map indexes using Annotation DB

Description

convertByAnnotationDB function returns keyType ids from dbName mapped to columnName in es.

Usage

convertByAnnotationDB(
  es,
  dbName,
  columnName,
  columnType,
  keyType,
  otherOptions
)

Arguments

es	source ExpressionSet
dbName	name of AnnotationDB file
columnName	name of column in featureData of source ExpressionSet
columnType	Type of indexes in columnName
keyType	Type of mapped indexes
otherOptions	additional parameters for conversion. Currently only named boolean deleteDotVersion is not ignored.

Value

JSON object with a vector of converted IDs

ctlab/phantasus documentation built on Oct. 11, 2024, 4:11 p.m.