getGSE: Load ExpressionSet from GEO Series

In ctlab/phantasus: Visual and interactive gene expression analysis

Load ExpressionSet from GEO Series

Description

getGSE return the ExpressionSet object(s) corresponding to GEO Series Identifier.

Usage

getGSE(
  name,
  destdir = getPhantasusConf("cache_folders")$geo_path,
  mirrorPath = getPhantasusConf("geo_mirrors")
)

Arguments

name	String, containing GEO identifier of the dataset. It should start with 'GSE' or 'GDS' and can include exact GPL to annotate dataset, separated with dash ('-') from the identifier.
destdir	Directory for caching loaded Series and GPL files from GEO database.
mirrorPath	URL string which specifies the source of matrices.

Value

List of ExpressionSet objects, that were available by given in name variable GEO identifier.

Examples

## Not run: 
    getGSE('GSE14308', destdir = 'cache')
    getGSE('GSE27112')
    getGSE('GSE53986')

## End(Not run)

ctlab/phantasus documentation built on Oct. 11, 2024, 4:11 p.m.