createES: Create ExpressionSet.

In ctlab/phantasus: Visual and interactive gene expression analysis

Create ExpressionSet.

Description

createES function produces an ExpressionSet object from given data, and exports it to global scope.

Usage

createES(data, pData, varLabels, fData, fvarLabels, eData)

Arguments

data	Gene expression matrix.
pData	Matrix with phenotypical data.
varLabels	Names of phenoData columns.
fData	Matrix with feature data.
fvarLabels	Names of featureData columns.
eData	List with experimentData

Value

produced ExpressionSet object

Examples

## Not run: 
data <- matrix(1:15, 5, 3)
pData <- c("A", "B", "C")
varLabels <- "cat"
fData <- c("p", "r", "s", "t", "u")
fvarLabels <- "id"
eData <- list(name="", lab="", contact="", title="", url="", other=list(), pubMedIds="")
createES(data, pData, varLabels, fData, fvarLabels, eData)

## End(Not run)

ctlab/phantasus documentation built on Oct. 11, 2024, 4:11 p.m.