plot_loc: Plot animal locations subset with all as background
In ctmm-initiative/ctmm-webapp: Web App For ctmm

plot_loc

R Documentation

Plot animal locations subset with all as background

Description

Draw a scatter plot of some animals' location with ggplot2 (like plot 2 Overview in app). To add all animals as background, the full data set of animals is also needed.

Usage

plot_loc(loc_data_subset, loc_data = NULL, point_size = 0.1)

Arguments

`loc_data_subset`	A subset of animals. A `data.table` subset taken from full data set of all animals location `loc_data`. Note the `id` column is factor with all animals identity as levels. So this subset still have all identities information, which is needed to color each animal consistently.
`loc_data`	The full data set of all animals location in combined `data.table` format, usually came from `combine()`. If background is not needed, this parameter can be skipped and take the default `NULL` value. In this case better use named parameter for `point_size` if needed, like `plot_loc(loc_data_subset, point_size = 0.2)` instead of `plot_loc(loc_data_subset, 0.2)` otherwise the second parameter will be interpreted as `loc_data`.
`point_size`	The size of point in plot. Denser plot may need smaller point size.