plot_ud: Plot a group of home ranges or occurrences
In ctmm-initiative/ctmm-webapp: Web App For ctmm

View source: R/5_vario_hrange_occurrence.R

plot_ud

R Documentation

Plot a group of home ranges or occurrences

Description

This is a wrapper over ctmm::plot.telemetry() to make group plot easier.

Usage

plot_ud(
  UD_list,
  level_vec = 0.95,
  color_vec = "blue",
  option = c("contour", "interval", "location"),
  columns = 2,
  cex = 0.65,
  tele_list = NULL
)

Arguments

`UD_list`	`ctmm` `UD` object list, which can be home range from `ctmm::akde()` or occurrences from `ctmm::occurrence()`. The names of list are needed for title of figures.
`level_vec`	The vector of `level.UD` in `ctmm::plot.telemetry()`. To be consistent with `ctmm` they are values 0 ~ 1 (for example 0.95). Note the app UI take percentage values 0 ~ 100 (for example 95) for easier input.
`color_vec`	The colors for contour, density and location points in each plot by order. Single color is used for all plots.
`option`	Whether to show contour, interval or location points. Note interval only take effect when contour exsits.
`columns`	The columns of the group plot layout.
`cex`	The magnification factor of plot text and symbols. See `par()`. You may need a smaller value if figure margins is too large
`tele_list`	`ctmm::as.telemetry()` telemetry list. When provided, animal locations are overlayed in plot. This should only be used for home range since it can interfere with occurrence plot.