plot_vario: Plot a group of empirical or modeled variograms.

View source: R/5_vario_hrange_occurrence.R

plot_varioR Documentation

Plot a group of empirical or modeled variograms.

Description

This is a wrapper over ctmm::plot.variogram() to make group plot easier.

Usage

plot_vario(
  vario_list,
  model_list = NULL,
  title_vec = NULL,
  fraction = 0.5,
  relative_zoom = TRUE,
  cex = 0.65,
  model_color = "blue",
  columns = 2
)

Arguments

vario_list

list of ctmm::variogram(). The names of list may be needed for figure titles.

model_list

CTMM models list. The names of list may be needed for figure titles. Draw modeled variogram if provided. The models list should match vario_list in length and animal, so that ith model is for ith variogram. Possible values:

  • It can be skipped to use default value NULL, and only empirical variograms are drawn. vario_list names will be used as figure title. Better use named parameters for others in this case.

  • list of guesstimated models from ctmm::ctmm.guess() on telemetry data, overlay guesstimate variogram.

  • list of fitted models from ctmm::ctmm.select() on vario_list, overlay modeled variogram.

  • It can be a list of list, with each item provide list of CTMM objects that to be plotted in each variogram. model_color can be a vector to specify color for each model.

title_vec

vector of figure titles. If not provided, names of vario_list or model_list will be used.

fraction

Fraction of time-lag range, 0 ~ 1.

relative_zoom
  • Relative mode zoom every plot by fraction of their own Time-lag range. The X, Y axes are not synced.

  • Absolute mode operate on the max Time-lag range individual in group, and all others scaled with same X, Y axes for easier comparison.

cex

The magnification factor of plot text and symbols. See par(). You may need a smaller value if figure margins is too large

model_color

The color of model variogram. It'll be same for every plot.

columns

The columns of the group plot layout.


ctmm-initiative/ctmm-webapp documentation built on Aug. 21, 2023, 4:39 a.m.