API for currocam/utilsHMMER
HMMERutils
| Global functions | |
|---|---|
| %>% | Man page |
| add_AAStringSet_to_tbl | Source code |
| add_physicochemical_properties_to_HMMER_tbl | Man page Source code |
| add_sequences_to_hmmer_tbl | Man page Source code |
| add_taxa_to_hmmer_tbl | Man page Source code |
| annotate_with_NCBI_taxid | Man page Source code |
| bind_and_unnest | Source code |
| calculate_percentage_sequence_identity | Source code |
| check_if_url | Source code |
| check_seqs | Source code |
| convert_input_seq | Source code |
| create_download_url_for_hmmer | Source code |
| delete_na_rows | Source code |
| download_file | Source code |
| extract_evalue_from_domains | Source code |
| extract_from_hmmer | Man page Source code |
| filter_hmmer | Man page Source code |
| fix_evalue_column | Source code |
| format_AAStringSet_into_hmmer_string | Source code |
| get_api_search_url | Source code |
| hmmer_evalues_cleveland_dot_plot | Man page Source code |
| hmmscan_2abl | Man page |
| pairwise_alignment_sequence_identity | Man page Source code |
| pairwise_sequence_identity_heatmap | Man page Source code |
| pairwise_sequence_identity_histogram | Man page Source code |
| params_into_query_list | Source code |
| parse_fasta_headers | Man page Source code |
| parse_results_into_tbl | Source code |
| phmmer_2abl | Man page |
| post_query | Source code |
| read_hmmer_from_json | Man page Source code |
| search_hmmscan | Man page Source code |
| search_hmmsearch | Man page Source code |
| search_in_hmmer | Source code |
| search_phmmer | Man page Source code |
