hmmscan_2abl: hmmscan_2abl
In currocam/utilsHMMER: HMMERutils

hmmscan_2abl

R Documentation

hmmscan_2abl

A DataFrame with 4 results of a hmmscan search of the 2abl sequence.

hmmscan_2abl

A data frame with 36 variables:

algorithm: HMMER algorithm
uuid: unique hmmer identifier
stats.page
stats.nhits: The number of hits found above reporting thresholds
stats.elapsed
stats.Z: The number of sequences or models in the target database
stats.Z_setby
stats.n_past_msv
stats.unpacked
stats.nseqs
stats.user
stats.domZ_setby
stats.n_past_bias
stats.sys
stats.n_past_fwd
stats.total
stats.nmodels: The number of models in this search
stats.nincluded: The number of sequences or models scoring above the significance threshold
stats.n_past_vit
stats.nreported: The number of sequences or models scoring above the reporting threshold
stats.domZ: The number of hits in the target database
hits.acc: Accession of the target
hits.desc: Description of the target
hits.pvalue: P-value of the score
hits.flags
hits.nregions
hits.taxid
hits.nreported
hits.hindex
hits.ndom: Total number of domains identified in this sequence
hits.name: Name of the target (sequence for phmmer/hmmsearch, HMM for hmmscan)
hits.score: Bit score of the sequence (all domains, without correction)
hits.bias
hits.domains: The domain or hit hash contains the details of the match, in particular the alignment between the query and the target.
hits.evalue: E-value of the score
hits.nincluded: E-value of the score