Man pages for currocam/utilsHMMER
HMMERutils
| add_physicochemical_properties_to_HMMER_tbl | Add EMBOSS-inspired theoretical physicochemical properties... |
| add_sequences_to_hmmer_tbl | Add sequences from one of the output files from HMMER server... |
| add_taxa_to_hmmer_tbl | Add taxonomic information to a Data Frame obtained from HMMER... |
| annotate_with_NCBI_taxid | Retrieve the taxonomic data for a given NCBI taxon ID using a... |
| extract_from_hmmer | Split a column composed of nested lists into multiple... |
| filter_hmmer | Filter dataframe depending on a column and a threshold. |
| hmmer_evalues_cleveland_dot_plot | A Cleveland dot plot with the evalues of the domains and... |
| hmmscan_2abl | hmmscan_2abl |
| pairwise_alignment_sequence_identity | Calculate the percentage of pairwise sequence identity |
| pairwise_sequence_identity_heatmap | Plot a heatmap with the pairwise identity percentages. |
| pairwise_sequence_identity_histogram | Plot a histogram with the pairwise identity percentages... |
| parse_fasta_headers | Extracts the sequence identifier from the recognized fasta... |
| phmmer_2abl | phmmer_2abl |
| pipe | Pipe operator |
| read_hmmer_from_json | Read the results of a search with HMMER from an json file. |
| search_hmmscan | Perform a hmmscan search of a protein sequence against a... |
| search_hmmsearch | Perform a hmmsearch search of a protein sequence against a... |
| search_phmmer | Perform a phmmer search of a protein sequence against a... |
