pairwise_sequence_identity_heatmap: Plot a heatmap with the pairwise identity percentages.
In currocam/utilsHMMER: HMMERutils
View source: R/pairwise_alignment.R
pairwise_sequence_identity_heatmap R Documentation
Plot a heatmap with the pairwise identity percentages.
Description
Plot a heatmap with the pairwise identity percentages.
Usage
pairwise_sequence_identity_heatmap(data, annotation = NULL)
Arguments
data
A Data Frame obtained from pairwise_alignment_sequence_identity.
annotation
A character vector with as many elements as sequences.
Value
A ggplot object
Examples
data(phmmer_2abl)
pairwise_alignment_sequence_identity(
seqs = phmmer_2abl$hits.fullfasta[6:10],
aln_type = "overlap",
pid_type = "PID2"
) %>%
pairwise_sequence_identity_histogram()
currocam/utilsHMMER documentation built on Feb. 19, 2023, 9:54 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/pairwise_alignment.R
| pairwise_sequence_identity_heatmap | R Documentation |
Plot a heatmap with the pairwise identity percentages.
Description
Plot a heatmap with the pairwise identity percentages.
Usage
pairwise_sequence_identity_heatmap(data, annotation = NULL)
Arguments
data |
A Data Frame obtained from pairwise_alignment_sequence_identity. |
annotation |
A character vector with as many elements as sequences. |
Value
A ggplot object
Examples
data(phmmer_2abl)
pairwise_alignment_sequence_identity(
seqs = phmmer_2abl$hits.fullfasta[6:10],
aln_type = "overlap",
pid_type = "PID2"
) %>%
pairwise_sequence_identity_histogram()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.