getVolcanoPlot: Plotly function to generate standard volcano plot from fold...

In cusom/CUSOM.ShinyHelpers: CU School of Medicine Helper Functions for Shiny Applications

Plotly function to generate standard volcano plot from fold change data

Description

Plotly function to generate standard volcano plot from fold change data

Usage

getVolcanoPlot(
  .data,
  foldChangeVariable,
  significanceVariable,
  significanceGroup,
  text,
  key,
  plotName,
  color,
  shape = "circle"
)

Arguments

.data	dataframe containing fold change data
foldChangeVariable	fold change variable
significanceVariable	p value variable
significanceGroup	significance group column - each group results in a separate trace
text	column containing text values to show in tooltip
key	- key column in fold change data - will be used for capuring select events
plotName	- name to attribute to plot (used for tracking clicks, events, etc)
color	- column with color to use for each row / group in dataset - should be unique per significance group / trace
shape	- optional shape - should be passed as a nammed column in source data.

Value

returns Plotly scatter plot showing fold change vs p value colored by significance group

cusom/CUSOM.ShinyHelpers documentation built on Oct. 23, 2023, 6:50 a.m.