data.validate.patients: data.validate.patients

In cvraut/iBAGpkg: integrative Bayesian Analysis of the Genome

data.validate.patients

Description

Validates mrna, outcome, and upstream data to ensure patients match.

Usage

data.validate.patients(mrna,outcome,data)

For each dataset the patient vector is assumed to be the rownames.

Arguments

mrna	:mrna data (follow convention of demo_mrna)
data	:list of other dataframes (follow demo conventions)
DEBUG	FALSE: flag to print debug statements
outcome:	outcome data (follow demo conventions)

Details

This function checks:

• patients are unique in mrna

• patients match across the list of datasets in data and mrna

• patients in outcome are in mrna and data

A match across patient vector is defined as equivalent order and content.

Value

boolean: whether this set of iBAG data is valid for the patients only

cvraut/iBAGpkg documentation built on July 26, 2022, 9:55 p.m.