cwarden45/COHCAP: CpG Island Analysis Pipeline for Illumina Methylation Array and Targeted BS-Seq Data
COHCAP (pronounced "co-cap") provides a pipeline to analyze single-nucleotide resolution methylation data (Illumina 450k/EPIC methylation array, targeted BS-Seq, etc.). It provides differential methylation for CpG Sites, differential methylation for CpG Islands, integration with gene expression data, with visualizaton options. Discussion Group: https://sourceforge.net/p/cohcap/discussion/bioconductor/
Getting started
Browse package contents
Package details |
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| Author | Charles Warden <cwarden@coh.org>, Yate-Ching Yuan <yyuan@coh.org>, Xiwei Wu <xwu@coh.org> |
| Bioconductor views | DNAMethylation DifferentialMethylation Epigenetics MethylSeq Microarray |
| Maintainer | Charles Warden <cwarden@coh.org> |
| License | GPL-3 |
| Version | 1.35.1 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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