addCyEdges: Add CyEdges

In cytoscape/RCy3: Functions to Access and Control Cytoscape

Add CyEdges

Description

Add one or more edges to a Cytoscape network by listing source and target node pairs.

Usage

addCyEdges(
  source.target.list,
  edgeType = "interacts with",
  directed = FALSE,
  network = NULL,
  base.url = .defaultBaseUrl
)

Arguments

source.target.list	A list (or list of lists) of source and target node name or SUID pairs
edgeType	The type of interaction. Default is 'interacts with'.
directed	boolean for whether interactions are directed. Default is FALSE.
network	(optional) Name or SUID of the network. Default is the "current" network active in Cytoscape.
base.url	(optional) Ignore unless you need to specify a custom domain, port or version to connect to the CyREST API. Default is http://localhost:1234 and the latest version of the CyREST API supported by this version of RCy3.

Value

A list of named lists of SUID, source and target for each edge added.

Examples

addCyEdges(c('sourceNode','targetNode'))
addCyEdges(list(c('s1','t1'),c('s2','t2')))

cytoscape/RCy3 documentation built on April 7, 2024, 2:17 p.m.