analyzeNetwork: Analyze Network

In cytoscape/RCy3: Functions to Access and Control Cytoscape

Analyze Network

Description

Calculate various network statistics.

Usage

analyzeNetwork(directed = FALSE, base.url = .defaultBaseUrl)

Arguments

directed	(optional) If TRUE, the network is considered a directed graph. Default is FALSE.
base.url	(optional) Ignore unless you need to specify a custom domain, port or version to connect to the CyREST API. Default is http://localhost:1234 and the latest version of the CyREST API supported by this version of RCy3.

Details

The results are added to the Node and Edge tables and the Results Panel. The summary statistics in the Results Panel are also returned by the function as a list of named values.

Value

Named list of summary statistics

Examples

analyzeNetwork()
analyzeNetwork(TRUE)

cytoscape/RCy3 documentation built on April 7, 2024, 2:17 p.m.