LASSO_model2_fit: LASSO model fit This function train LASSO model on train set...

Description Usage Arguments Examples

Description

LASSO model fit This function train LASSO model on train set and test on test set and evaluate model fit

Usage

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LASSO_model2_fit(train, test, m_id_sort, i, eval = "r2",
  num_folds = 10)

Arguments

train

training dataset

test

test dataset

m_id_sort

metabolite name vector

i

response metabolite's index, used in for loop

eval

model fit evaluation, options are r-squared and MSE. Default to r-squared

number

of folds in lasso cv Default to 10 folds

Examples

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MSE <- c()
r2<- c()
for (i in (1:length(m_id_sort))){
 set.seed(1)
 MSE[i] <- LASSO_model2_fit(train, test, m_id_sort, i, eval = "mse")
 r2[i] <- LASSO_model2_fit(train, test, m_id_sort, i, eval = "r2")
}

czang97/mpred documentation built on July 9, 2019, 2:38 p.m.