NEWS.md

In cziegenhain/UMIcountR: tools for spike-in UMI analysis

UMIcountR 0.5.0

• new functions to process complex molecular spike-in set
• add complex spike-in set barcode annotation (molspike_barcodes_infos_fivep_final)

UMIcountR 0.2.2

Handle some unexpected situations.

UMIcountR 0.2.1

Fix implementation of ngram by passing split UMI length correctly.

UMIcountR 0.2.0

• Large change in the error correction utilities. Now builds on BK-Tree datastructure for massive increase in computational efficiency in UMI error corrections. Builds on pybktree package in python called via reticulate.

UMIcountR 0.1.2

• Add option to subset the length of the spUMI when loading.
• Correct handling of gene name / contig when loading.
• Removed bug with hd1 of spUMI.
• Fix bug if ggrastr not installed.

UMIcountR 0.1.1

• Add biocViews attribute for correct installation behavior.

UMIcountR 0.1.0

• Initial version of the UMIcountR package with extract_spike_dat, get_overrepresented_spikes, plot_spike_distances, return_corrected_umi and subsample_recompute functions.

cziegenhain/UMIcountR documentation built on May 30, 2022, 5:38 p.m.