Files in d93espinoza/barcodetrackR

Functions for Analyzing Cellular Barcoding Data

NEWS.md R/barcode_binary_heatmap.R R/barcode_ggheatmap.R R/barcode_ggheatmap_stat.R R/barcode_stat_test.R R/bias_histogram.R R/bias_lineplot.R R/bias_ridge_plot.R R/build_index_html.R R/chord_diagram.R R/clonal_contribution.R R/clonal_count.R R/clonal_diversity.R R/cor_plot.R R/create_SE.R R/data.R R/dist_plot.R R/estimate_barcode_threshold.R R/get_top_clones.R R/launchApp.R R/mds_plot.R R/rank_abundance_plot.R R/rank_abundance_stat_test.R R/scatter_plot.R R/stat_hist.R R/subset_SE.R R/threshold.R R/threshold_SE.R README.md inst/barcode_app/server.R inst/barcode_app/ui.R inst/extdata/BelderbosME_etal/README.md inst/extdata/BelderbosME_etal/preprocessing.R inst/extdata/SixE_etal/README.md inst/extdata/SixE_etal/preprocessing.R inst/extdata/WuC_etal_appdata/README.md inst/sample_calls/make_figures_barcodetrackR_v10.Rmd man/barcode_binary_heatmap.Rd man/barcode_ggheatmap.Rd man/barcode_ggheatmap_stat.Rd man/barcode_stat_test.Rd man/bias_histogram.Rd man/bias_lineplot.Rd man/bias_ridge_plot.Rd man/build_index_html.Rd man/chord_diagram.Rd man/clonal_contribution.Rd man/clonal_count.Rd man/clonal_diversity.Rd man/cor_plot.Rd man/create_SE.Rd man/dist_plot.Rd man/estimate_barcode_threshold.Rd man/get_top_clones.Rd man/launchApp.Rd man/mds_plot.Rd man/rank_abundance_plot.Rd man/rank_abundance_stat_test.Rd man/scatter_plot.Rd man/stat_hist.Rd man/subset_SE.Rd man/threshold.Rd man/threshold_SE.Rd man/wu_subset.Rd tests/testthat.R tests/testthat/test-clonal-bias-functions.R tests/testthat/test-clonal-diversity-functions.R tests/testthat/test-clonal-pattern-functions.R tests/testthat/test-load-data.R tests/testthat/test-shared-clonality-functions.R vignettes/Introduction_to_barcodetrackR.Rmd