Files in d93espinoza/barcodetrackR
Functions for Analyzing Cellular Barcoding Data
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/barcode_binary_heatmap.R
R/barcode_ggheatmap.R
R/barcode_ggheatmap_stat.R
R/barcode_stat_test.R
R/bias_histogram.R
R/bias_lineplot.R
R/bias_ridge_plot.R
R/build_index_html.R
R/chord_diagram.R
R/clonal_contribution.R
R/clonal_count.R
R/clonal_diversity.R
R/cor_plot.R
R/create_SE.R
R/data.R
R/dist_plot.R
R/estimate_barcode_threshold.R
R/get_top_clones.R
R/launchApp.R
R/mds_plot.R
R/rank_abundance_plot.R
R/rank_abundance_stat_test.R
R/scatter_plot.R
R/stat_hist.R
R/subset_SE.R
R/threshold.R
R/threshold_SE.R
README.md
data/wu_subset.rda
inst/CITATION
inst/barcode_app/rsconnect/shinyapps.io/diegoespinoza/barcode_app.dcf
inst/barcode_app/rsconnect/shinyapps.io/dunbarlabnih/barcode_app.dcf
inst/barcode_app/server.R
inst/barcode_app/ui.R
inst/extdata/BelderbosME_etal/README.md
inst/extdata/BelderbosME_etal/count_matrix_mouse_C21.txt
inst/extdata/BelderbosME_etal/metadata_mouse_C21.txt
inst/extdata/BelderbosME_etal/preprocessing.R
inst/extdata/SixE_etal/README.md
inst/extdata/SixE_etal/WAS5_metadata.txt
inst/extdata/SixE_etal/WAS5_reads.txt
inst/extdata/SixE_etal/preprocessing.R
inst/extdata/WuC_etal_appdata/README.md
inst/extdata/WuC_etal_appdata/sample_data_ZJ31.txt
inst/extdata/WuC_etal_appdata/sample_metadata_ZJ31.txt
inst/sample_calls/make_figures_barcodetrackR_v10.Rmd
man/barcode_binary_heatmap.Rd
man/barcode_ggheatmap.Rd
man/barcode_ggheatmap_stat.Rd
man/barcode_stat_test.Rd
man/bias_histogram.Rd
man/bias_lineplot.Rd
man/bias_ridge_plot.Rd
man/build_index_html.Rd
man/chord_diagram.Rd
man/clonal_contribution.Rd
man/clonal_count.Rd
man/clonal_diversity.Rd
man/cor_plot.Rd
man/create_SE.Rd
man/dist_plot.Rd
man/estimate_barcode_threshold.Rd
man/get_top_clones.Rd
man/launchApp.Rd
man/mds_plot.Rd
man/rank_abundance_plot.Rd
man/rank_abundance_stat_test.Rd
man/scatter_plot.Rd
man/stat_hist.Rd
man/subset_SE.Rd
man/threshold.Rd
man/threshold_SE.Rd
man/wu_subset.Rd
tests/testthat.R
tests/testthat/test-clonal-bias-functions.R
tests/testthat/test-clonal-diversity-functions.R
tests/testthat/test-clonal-pattern-functions.R
tests/testthat/test-load-data.R
tests/testthat/test-shared-clonality-functions.R
vignettes/Introduction_to_barcodetrackR.Rmd
