get_top_clones: get_top_clones (helper function)
In d93espinoza/barcodetrackR: Functions for Analyzing Cellular Barcoding Data

Retrieves the sequence(s) (row-identifier(s)) of the top "n_clones" within the specified sample from a SummarizedExperiment object.

1	get_top_clones(your_SE, SAMPLENAME_choice, n_clones = 10)

`your_SE`	A summarized experiment.
`SAMPLENAME_choice`	Name of the SAMPLENAME identifier within your_SE from which to retrieve the top clones from.
`n_clones`	Numeric. Number of top clones from the specified sample that should be retrieved.

The row indices for the top n_clones in the dataset, using the 'ranks' assay.

1 2	data(wu_subset) get_top_clones(wu_subset, "ZJ31_6m_T", n_clones = 10)

d93espinoza/barcodetrackR documentation built on April 28, 2021, 1:58 p.m.

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