README.md
In d93espinoza/barcodetrackR: Functions for Analyzing Cellular Barcoding Data
barcodetrackR
barcodetrackR is an R package developed for the analysis and visualization of clonal tracking data from cellular barcoding experiments.
The R package and functions were created by Diego A. Espinoza, Ryland D. Mortlock, Samson J. Koelle, and others at Cynthia Dunbar's laboratory at the National Heart, Lung, and Blood Institutes of Health.
Installation
Three options for installation are available. For the most recent version of the package, install from GitHub using remotes or devtools. For stable versions of the package, see Bioconductor/Zenodo.
1) GitHub installation
remotes::install_github("d93espinoza/barcodetrackR")
2) Bioconductor installation
barcodetrackR Bioconductor page
BiocManager::install("barcodetrackR")
3) Zenodo installation
# v0.99.3 was frozen on Zenodo on 2021-03-16, prior to publication and can be accessed using the above DOI badge.
Usage, and Documentation
Examples and documentation are available at: http://dunbarlabNIH.github.io/barcodetrackR/
Our preprint is available on bioRxiv
Web App
To run the barcodetrackR app from the web, please visit: https://dunbarlabnih.shinyapps.io/barcode_app/
Issues
Issues should be addressed to: https://github.com/dunbarlabNIH/barcodetrackR/issues
d93espinoza/barcodetrackR documentation built on April 28, 2021, 1:58 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
barcodetrackR
barcodetrackR is an R package developed for the analysis and visualization of clonal tracking data from cellular barcoding experiments.
The R package and functions were created by Diego A. Espinoza, Ryland D. Mortlock, Samson J. Koelle, and others at Cynthia Dunbar's laboratory at the National Heart, Lung, and Blood Institutes of Health.
Installation
Three options for installation are available. For the most recent version of the package, install from GitHub using remotes or devtools. For stable versions of the package, see Bioconductor/Zenodo.
1) GitHub installation
remotes::install_github("d93espinoza/barcodetrackR")
2) Bioconductor installation
barcodetrackR Bioconductor page
BiocManager::install("barcodetrackR")
3) Zenodo installation
# v0.99.3 was frozen on Zenodo on 2021-03-16, prior to publication and can be accessed using the above DOI badge.
Usage, and Documentation
Examples and documentation are available at: http://dunbarlabNIH.github.io/barcodetrackR/
Our preprint is available on bioRxiv
Web App
To run the barcodetrackR app from the web, please visit: https://dunbarlabnih.shinyapps.io/barcode_app/
Issues
Issues should be addressed to: https://github.com/dunbarlabNIH/barcodetrackR/issues
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.