wu_subset: Small subset of Wu barcoding dataset
In d93espinoza/barcodetrackR: Functions for Analyzing Cellular Barcoding Data

Description Usage Format Source

A SummarizedExperiment object containing a subset of the Wu barcoding dataset. It includes peripheral blood T, B, Gr, NK_56, and NK-16 samples from the first 4 times points of macaque ZJ31.

1	data(wu_subset)

A SummarizedExperiment object with 215 features rows and 20 samples:

assays: includes the counts, proportions, ranks, normalized, and logs assays
colData: includes the accompanying metadata for the samples
metadata: includes the scale_factor used and the log_base used in the log assay

...

system.file("sample_data/WuC_etal/monkey_ZJ31.txt", package = "barcodetrackR") system.file("sample_data/WuC_etal/monkey_ZJ31_metadata.txt", package = "barcodetrackR") wu_SE <- create_SE(your_data = wu_dataframe, meta_data = wu_metadata, threshold = 0.005) wu_subset <- wu_SE[,1:20] http://dx.doi.org/10.1126/sciimmunol.aat9781

d93espinoza/barcodetrackR documentation built on April 28, 2021, 1:58 p.m.