mutationCounts-class: Class '"mutationCounts"'

In dami82/mutSignatures_dev: Decipher Mutational Signatures from Somatic Mutational Catalogs

Objects from the Class

Objects can be created by calls of the form new("mutationCounts", x, muts, samples).

Slots

counts:

Object of class "data.frame" ~~

mutTypes:

Object of class "data.frame" ~~

sampleId:

Object of class "data.frame" ~~

Methods

as.data.frame

signature(x = "mutationCounts"): ...

as.matrix

signature(x = "mutationCounts"): ...

[

signature(x = "mutationCounts", i = "numeric", j = "ANY", drop = "ANY"): ...

coerceObj

signature(x = "mutationCounts", to = "character"): ...

getCounts

signature(x = "mutationCounts"): ...

getMutationTypes

signature(x = "mutationCounts"): ...

getSampleIdentifiers

signature(x = "mutationCounts"): ...

initialize

signature(.Object = "mutationCounts"): ...

plot

signature(x = "mutationCounts", y = "ANY"): ...

print

signature(x = "mutationCounts"): ...

show

signature(object = "mutationCounts"): ...

Examples

showClass("mutationCounts")

dami82/mutSignatures_dev documentation built on May 17, 2019, 7:02 p.m.