Files in dami82/mutSignatures_dev
Decipher Mutational Signatures from Somatic Mutational Catalogs
DESCRIPTION
NAMESPACE
R/core_mutSignatures_scr_5.R
README.md
man/addWeak.Rd
man/alexaNMF.Rd
man/as.data.frame-methods.Rd
man/as.list-methods.Rd
man/as.matrix-methods.Rd
man/as.mutation.counts-methods.Rd
man/as.mutation.counts.Rd
man/as.mutation.signatures-methods.Rd
man/as.mutation.signatures.Rd
man/as.mutsign.exposures-methods.Rd
man/as.mutsign.exposures.Rd
man/attachContext.Rd
man/attachMutType.Rd
man/bootstrapCancerGenomes.Rd
man/cbind2-methods.Rd
man/chihJenNMF.Rd
man/coerceObj-methods.Rd
man/coerceObj.Rd
man/countMutTypes.Rd
man/decipherMutationalProcesses.Rd
man/deconvoluteMutCounts.Rd
man/evaluateStability.Rd
man/extractSignatures.Rd
man/extractXvarlinkData.Rd
man/filterOutIterations.Rd
man/filterSNV.Rd
man/frequencize.Rd
man/getCosmicSignatures.Rd
man/getCounts-methods.Rd
man/getCounts.Rd
man/getFwkParam-methods.Rd
man/getFwkParam.Rd
man/getMutationTypes-methods.Rd
man/getMutationTypes.Rd
man/getSampleIdentifiers-methods.Rd
man/getSampleIdentifiers.Rd
man/getSignatureIdentifiers-methods.Rd
man/getSignatureIdentifiers.Rd
man/getTestRunArgs.Rd
man/importVCFfiles.Rd
man/initialize-methods.Rd
man/leadZeros.Rd
man/matchSignatures.Rd
man/mutFrameworkParams-class.Rd
man/mutSignExposures-class.Rd
man/mutSignatures-package.Rd
man/mutationCounts-class.Rd
man/mutationSignatures-class.Rd
man/plot-methods.Rd
man/plotMutCount.Rd
man/plotMutTypeProfile.Rd
man/prelimProcessAssess.Rd
man/print-methods.Rd
man/processVCFdata.Rd
man/removeMismatchMut.Rd
man/removeWeak.Rd
man/resolveMutSignatures.Rd
man/revCompl.Rd
man/setFwkParam-methods.Rd
man/setFwkParam.Rd
man/setMutClusterParams.Rd
man/show-methods.Rd
man/silhouetteMLB.Rd
man/simplifySignatures.Rd
man/sortByMutations.Rd
man/table2df.Rd
man/z[-methods.Rd
