frequencize: Convert Counts to Frequencies

Usage Arguments Examples

View source: R/core_mutSignatures_scr_5.R

Usage

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frequencize(countMatrix, permille = TRUE)

Arguments

countMatrix
permille

Examples

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##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.

## The function is currently defined as
function (countMatrix, permille = TRUE) 
{
    out <- list()
    cf <- ifelse(permille, 1000, 1)
    out[["colSums"]] <- apply(countMatrix, 2, sum)
    out[["freqs"]] <- cf * apply(countMatrix, 2, (function(clmn) {
        clmn/sum(clmn)
    }))
    return(out)
  }

dami82/mutSignatures_dev documentation built on May 17, 2019, 7:02 p.m.