processVCFdata: Process VCF Files

In dami82/mutSignatures_dev: Decipher Mutational Signatures from Somatic Mutational Catalogs

Description

Process VCF Files

Usage

processVCFdata(vcfData, BSGenomeDb, chr_colName = "CHROM", pos_colName = "POS", ref_colName = "REF", alt_colName = "ALT", sample_colName = NULL, nucl_contextN = 3, verbose = TRUE)

Arguments

vcfData	Data
BSGenomeDb	BSgenome
chr_colName	ch
pos_colName	name
ref_colName	name
alt_colName	name
sample_colName	name
nucl_contextN	name
verbose	verb

dami82/mutSignatures_dev documentation built on May 17, 2019, 7:02 p.m.