Files in danStich/shadia

American shad dam passage performance standard model for R

R/00-androscogginRiverModel.R R/00-connecticutRiverModel.R R/00-kennebecRiverModel.R R/00-merrimackRiverModel.R R/00-mohawkHudsonRiverModel.R R/00-penobscotRiverModel.R R/00-sacoRiverModel.R R/00-susquehannaRiverModel.R R/01-defineOutputVectors-last.R R/01-defineOutputVectors.R R/02-getMaxAge.R R/03-getMaturity.R R/04-defineHydroSystem.R R/05-defineHabitat.R R/06-setupTemperatureData.R R/07-definePassageRates.R R/08-annualUpstream.R R/09-01-upstreamMortHudson.R R/09-fwFishingMort.R R/10-simStartingPop.R R/11-setScalar.R R/12-scalePop.R R/13-00-inner-loop-sampling.R R/13-01-defineFunctions.R R/13-02-00-simDailyTemperatures.R R/13-02-01-simTemperature.R R/13-03-getPhotoperiod.R R/13-04-simGrowth.R R/13-05-assignFishToRoutes.R R/13-06-simMarineS.R R/13-07-get_rkm1.R R/14-populationMatrices.R R/15-00-processCohorts.R R/15-01-00-processPopulation.R R/15-01-01-createPUMatrix.R R/15-01-02-assignFishToPU.R R/15-01-03-additionalEggsProcessing.R R/16-postSpawnMortality.R R/17-downstreamMigration.R R/18-nextGeneration.R R/19-fillOutputVectors.R R/20-writeData.R R/RcppExports.R R/data.R R/shadia.R README.md inst/examples/fixed_pnr.R inst/examples/sf-exampleANR.R inst/examples/sf-exampleCTR.R inst/examples/sf-exampleKBR.R inst/examples/sf-exampleMHR.R inst/examples/sf-exampleMMR.R inst/examples/sf-examplePNR.R inst/examples/sf-exampleSACO.R inst/examples/sf-exampleSSR.R inst/examples/variable_pnr.R inst/examples/watershed_pnr.R man/CI.Rd man/addStochList.Rd man/additionalEggsProcessing.Rd man/androscogginRiverModel.Rd man/annualUpstream.Rd man/arr.B.Rd man/arr.R.Rd man/assignFishToPU.Rd man/assignFishToRoutes.Rd man/b.parms.Rd man/b.parms_merrimack.Rd man/connecticutRiverModel.Rd man/createPUMatrix.Rd man/ctr_proj45.Rd man/ctr_proj85.Rd man/defineHabitat.Rd man/defineHydroSystem.Rd man/defineOutputVectors.Rd man/definePassageRates.Rd man/downstreamMigration.Rd man/fillOutputVectors.Rd man/fish.Rd man/fwFishingMort.Rd man/getMaturity.Rd man/getMaxAge.Rd man/getPhotoperiod.Rd man/get_rkm1.Rd man/hudson_blueback.Rd man/hudson_shad.Rd man/innerLoopSampling.Rd man/invlogit.Rd man/kennebecRiverModel.Rd man/length_weight.Rd man/merrimackRiverModel.Rd man/mohawkHudsonRiverModel.Rd man/nextGeneration.Rd man/penobscotRiverModel.Rd man/pnr_proj45.Rd man/pnr_proj85.Rd man/populationMatrices.Rd man/postSpawnMortality.Rd man/processCohorts.Rd man/processPopulation.Rd man/r.parms.Rd man/r.parms_merrimack.Rd man/rcp45_sst.Rd man/rcp85_sst.Rd man/regions.Rd man/sacoRiverModel.Rd man/scalePop.Rd man/setScalar.Rd man/setUpTemperatureData.Rd man/shadia.Rd man/simDailyTemperatures.Rd man/simGrowth.Rd man/simMarineS.Rd man/simStartingPop.Rd man/simTemperature.Rd man/substrRight.Rd man/susquehannaRiverModel.Rd man/tempD.Rd man/tempData.Rd man/tempData_androscoggin.Rd man/tempData_connecticut.Rd man/tempData_hudson.Rd man/tempData_kennebec.Rd man/tempData_merrimack.Rd man/tempData_saco.Rd man/tempData_susquehanna.Rd man/upstreamMort.Rd man/vbgf_agg.Rd man/vbgf_f.Rd man/vbgf_hudson_agg.Rd man/vbgf_hudson_f.Rd man/vbgf_hudson_m.Rd man/vbgf_kennebec_bbh_agg.Rd man/vbgf_kennebec_bbh_f.Rd man/vbgf_kennebec_bbh_m.Rd man/vbgf_m.Rd man/writeData.Rd