Man pages for danjlawson/badMIXTURE
Validating Structure With Chromosome Painting
| aggregrateDataForK | Aggregate a matrix of dimension M to dimension K by taking... |
| arisim_marginalisation | Ari-like Simulated genetic data for the Marginalisation... |
| arisim_recent | Ari-like Simulated genetic data for the Recent Admixture... |
| arisim_remnants | Ari-like Simulated genetic data for the Remnants Scenario |
| arisimsmall | Small dataset for experimentation |
| badMIXTURE-package | Compare admixture estimates from STRUCTURE-like programs to... |
| compareMixtureToData | Compare a mixture solution to some data. |
| compareMixtureToDataDirect | Compare a mixture solution to some data, without reordering... |
| dendrogramHeights | Find all of the unique heights of a dendrogram at which it... |
| idsToList | Convert an ID table into a population list |
| MakeColorRYWGB | Make a colour palette moving from Red to Yellow to White to... |
| MakeColorWYRPB | Make a colour palette moving from White to Yellow to Red to... |
| MakeColorYRP | Make a colour palette moving from Yellow to Red to Purple |
| matColMeans | Aggregate a matrix by taking column means |
| matColSums | Aggregate a matrix by taking column sums |
| mixPainter | Find and test mixPainter binaries |
| mixturePlot | Plot a mixture fit vs the data. |
| oneByOnePrediction | Obtain a prediction for the ancestral clusters, removing... |
| popDendRelabelMembers | Relabel a dendrogram based on IDs |
| readChunkcounts | Load a chunkcounts matrix from chromopainter |
| readQ | Load an ADMIXTURE Q file |
| reorderQ | Reorder a Q matrix into the order that we |
| rgbDistCols | Obtain a colour palette for a matrix using multi-dimensional... |
| uniqueCutHeights | Find all of the unique heights of a dendrogram at which it... |
