readChunkcounts: Load a chunkcounts matrix from chromopainter
In danjlawson/badMIXTURE: Validating Structure With Chromosome Painting

Description Usage Arguments Value See Also Examples

Read chromopainter output and present it in the form that badMIXTURE needs; i.e. a matrix normalised to have rowsums = 1, which is the default behaviour

1	readChunkcounts(filename, skip = 1)

`filename`	Name of the chunkcounts file to be loaded
`skip`	number of lines to skip at the top of the file. Set to 1 if there is a CFACTOR header.

A matrix of normalised chunkcounts

readQ

## Not run: 
recent_ariL=readChunkcounts((system.file("extdata",
"Recent_admix.pruned_cp_pop_linked.chunkcounts.out", package = "badMIXTURE")))

## End(Not run)