compute.oncoscore: compute.oncoscore

Description Usage Arguments Value Examples

View source: R/OncoScore.R

Description

compute the OncoScore for a list of genes

Usage

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compute.oncoscore(
  data,
  filter.threshold = 0,
  analysis.mode = "Log2",
  cutoff.threshold = 21.09,
  file = NULL,
  filter.invalid = TRUE
)

Arguments

data

input data as result of the function perform.query

filter.threshold

threshold to filter for a minimum number of citations for the genes

analysis.mode

logaritmic scores to be computed, i.e., log10, log2, natural log or log5

cutoff.threshold

threshold to be used to asses the oncogenes

file

should I save the results to text files?

filter.invalid

auto-remove genes with invalid count

Value

the computed OncoScores and the clusters for the genes

Examples

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danro9685/OncoScore documentation built on May 8, 2020, 8:28 a.m.