compute.oncoscore: compute.oncoscore

In danro9685/OncoScore: A tool to identify potentially oncogenic genes

compute.oncoscore

Description

compute the OncoScore for a list of genes

Usage

compute.oncoscore(
  data,
  filter.threshold = 0,
  analysis.mode = "Log2",
  cutoff.threshold = 21.09,
  file = NULL,
  filter.invalid = TRUE
)

Arguments

data	input data as result of the function perform.query
filter.threshold	threshold to filter for a minimum number of citations for the genes
analysis.mode	logaritmic scores to be computed, i.e., log10, log2, natural log or log5
cutoff.threshold	threshold to be used to asses the oncogenes
file	should I save the results to text files?
filter.invalid	auto-remove genes with invalid count

Value

the computed OncoScores and the clusters for the genes

Examples

data(query)
compute.oncoscore(query)

danro9685/OncoScore documentation built on Nov. 1, 2024, 7:48 a.m.