perform.query.from.region: perform.query.from.region

Description Usage Arguments Value Examples

View source: R/queries.R

Description

Perform the query to PubMed on a given chromosomic region

Usage

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perform.query.from.region(
  chromosome,
  start = NA,
  end = NA,
  gene.num.limit = 100
)

Arguments

chromosome

chromosome to be retireved

start

initial position to be used

end

final position to be used

gene.num.limit

A limit to the genes to be considered in the analysis; this is done to limit the number of queries to PubMed

Value

The frequencies of the genes in the cancer related documents and in all the documents retireved on PubMed

Examples

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chromosome = 15
start = 200000
end = 300000

danro9685/OncoScore documentation built on May 8, 2020, 8:28 a.m.