compute.oncoscore.timeseries: compute.oncoscore.timeseries

In danro9685/OncoScore: A tool to identify potentially oncogenic genes

compute.oncoscore.timeseries

Description

perform the OncoScore time series analysis for a list of genes and data times

Usage

compute.oncoscore.timeseries(
  data,
  filter.threshold = 0,
  analysis.mode = "Log2",
  cutoff.threshold = 21.09,
  file = NULL
)

Arguments

data	input data as result of the function perform.query.timeseries
filter.threshold	threshold to filter for a minimum number of citations for the genes
analysis.mode	logaritmic scores to be computed, i.e., log10, log2, natural log or log5
cutoff.threshold	threshold to be used to asses the oncogenes
file	should I save the results to text files?

Value

the performed OncoScores time series analysis

Examples

data(query.timepoints)
compute.oncoscore.timeseries(query.timepoints)

danro9685/OncoScore documentation built on Nov. 1, 2024, 7:48 a.m.