perform.query.timeseries: perform.query.timeseries

In danro9685/OncoScore: A tool to identify potentially oncogenic genes

perform.query.timeseries

Description

perforn the query to PubMed for the time series analysis

Usage

perform.query.timeseries(
  list.of.genes,
  list.of.datatimes,
  gene.num.limit = 100,
  timepoints.limit = 10,
  custom.search = NA
)

Arguments

list.of.genes	The list of genes to be used in the queries to PubMed
list.of.datatimes	The list of time points to be used in the queries to PubMed
gene.num.limit	A limit to the genes to be considered in the analysis; this is done to limit the number of queries to PubMed
timepoints.limit	A limit to the time points to be considered in the analysis; this is done to limit the number of queries to PubMed
custom.search	A custom set of keyworkds to be used when quering PubMed

Value

The frequencies of the genes in the cancer related documents and in all the documents retireved on PubMed at the specified time points

Examples

data(genes)
data(timepoints)

danro9685/OncoScore documentation built on April 28, 2024, 2:01 p.m.