BScredInterval: Get credibility interval via binomial bayes distribution
In databio/RPIM: Assess epigenetic heterogeneity with proportion of intermediate methylation
Description
Usage
Arguments
Value
Description
Get credibility interval via binomial bayes distribution
Usage
1
2
BScredInterval(bsData, methylCol = "methylCount", coverageCol = "coverage",
confLevel = 0.95)
Arguments
bsData
Bisulfite sequencing data
methylCol
Name of column containing methylation count;
defaults to "methylCount"
coverageCol
Name of column containing coverage (i.e. number of reads);
defaults to "coverage"
confLevel
A decimal indicating the level of confidence
to be used while creating cached the binomial bayes credibility interval;
default is .95 for 95 percent confidence
Value
Bisulfite sequencing data as a data.table object with columns
indicating upper and lower limits of Bayesian binomial confidence interval
for methylation
databio/RPIM documentation built on May 14, 2019, 2:41 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
Get credibility interval via binomial bayes distribution
Usage
1 2 | BScredInterval(bsData, methylCol = "methylCount", coverageCol = "coverage",
confLevel = 0.95)
|
Arguments
bsData |
Bisulfite sequencing data |
methylCol |
Name of column containing methylation count; defaults to "methylCount" |
coverageCol |
Name of column containing coverage (i.e. number of reads); defaults to "coverage" |
confLevel |
A decimal indicating the level of confidence to be used while creating cached the binomial bayes credibility interval; default is .95 for 95 percent confidence |
Value
Bisulfite sequencing data as a data.table object with columns
indicating upper and lower limits of Bayesian binomial confidence interval
for methylation
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.