BScredIntervalCache: Get credibility interval via binomial bayes distribution and...

In databio/RPIM: Assess epigenetic heterogeneity with proportion of intermediate methylation

Description

Get credibility interval via binomial bayes distribution and caching

Usage

BScredIntervalCache(bsData, cachedBinomialIntervals,
  methylCol = "methylCount", coverageCol = "coverage", confLevel = 0.95)

Arguments

bsData	Bisulfite sequencing data
cachedBinomialIntervals	cachedBinomialIntervals
methylCol	Name of column containing methylation count; defaults to "methylCount"
coverageCol	Name of column containing coverage (i.e. number of reads); defaults to "coverage"
confLevel	A decimal indicating the level of confidence to be used while creating cached the binomial bayes credibility interval; default is .95 for 95 percent confidence

Value

Bisulfite sequencing data as a data.table object with columns indicating upper and lower limits of Bayesian binomial confidence interval for methylation

databio/RPIM documentation built on May 14, 2019, 2:41 p.m.