BScredInterval: Get credibility interval via binomial bayes distribution
In databio/epihet: Assess epigenetic heterogeneity with proportion of intermediate methylation
Description
Usage
Arguments
Value
Description
Get credibility interval via binomial bayes distribution
Usage
1
2
BScredInterval(bsData, methylCol = "methylCount", coverageCol = "coverage",
confLevel = 0.95)
Arguments
bsData
Bisulfite sequencing data
methylCol
Name of column containing methylation count;
defaults to "methylCount"
coverageCol
Name of column containing coverage (i.e. number of reads);
defaults to "coverage"
confLevel
A decimal indicating the level of confidence
to be used while creating cached the binomial bayes credibility interval;
default is .95 for 95 percent confidence
Value
Bisulfite sequencing data as a data.table object with columns
indicating upper and lower limits of Bayesian binomial confidence interval
for methylation
databio/epihet documentation built on May 24, 2019, 2:03 a.m.
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Description Usage Arguments Value
Description
Get credibility interval via binomial bayes distribution
Usage
1 2 | BScredInterval(bsData, methylCol = "methylCount", coverageCol = "coverage",
confLevel = 0.95)
|
Arguments
bsData |
Bisulfite sequencing data |
methylCol |
Name of column containing methylation count; defaults to "methylCount" |
coverageCol |
Name of column containing coverage (i.e. number of reads); defaults to "coverage" |
confLevel |
A decimal indicating the level of confidence to be used while creating cached the binomial bayes credibility interval; default is .95 for 95 percent confidence |
Value
Bisulfite sequencing data as a data.table object with columns
indicating upper and lower limits of Bayesian binomial confidence interval
for methylation
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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