BScredIntervalCache: Get credibility interval via binomial bayes distribution and...

Description Usage Arguments Value

Description

Get credibility interval via binomial bayes distribution and caching

Usage

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BScredIntervalCache(bsData, cachedBinomialIntervals,
  methylCol = "methylCount", coverageCol = "coverage", confLevel = 0.95)

Arguments

bsData

Bisulfite sequencing data

cachedBinomialIntervals

cachedBinomialIntervals

methylCol

Name of column containing methylation count; defaults to "methylCount"

coverageCol

Name of column containing coverage (i.e. number of reads); defaults to "coverage"

confLevel

A decimal indicating the level of confidence to be used while creating cached the binomial bayes credibility interval; default is .95 for 95 percent confidence

Value

Bisulfite sequencing data as a data.table object with columns indicating upper and lower limits of Bayesian binomial confidence interval for methylation


databio/epihet documentation built on May 24, 2019, 2:03 a.m.