runGOSEQ: Functional Annotation Pipeline (Both pipelines)

In dbdimitrov/BugleSeq: BingleSeq RNA-Seq Data Analysis

Description

Runs the GO pipeline according to the users preferences

Usage

runGOSEQ(
  deGenes,
  data,
  genome,
  symbol,
  testType,
  pCorrect,
  pValue,
  appNum,
  session
)

Arguments

deGenes	a vector with DE gene names
data	Filters by abs. significant, upregulation or downregulation
genome	The genome to be used
symbol	Type of Gene symbol
testType	Type of Test (Cellular component, Molecular function, etc.)
pCorrect	Whether to filter by FDR p-value or uncorrected p-value
pValue	P-value threshold
appNum	Format entered data appropriately to the app launched

Value

Returns a dataframe with Functional Annotation Results

dbdimitrov/BugleSeq documentation built on July 17, 2021, 1:02 p.m.