sc3Cluster: SC3 Clustering Pipeline

In dbdimitrov/BugleSeq: BingleSeq RNA-Seq Data Analysis

Description

SC3 Clustering Pipeline

Usage

sc3Cluster(s_object, minDrop, maxDrop, estK, clustNo, nStart, session)

Arguments

s_object	Seurat object with scaled and PCA data
minDrop	Genes with percent of dropouts smaller than minDrop are filtered out before clustering.
maxDrop	Genes with percent of dropouts larger than maxDrop are filtered out before clustering.
estK	Boolean - whether to estimate cluster number or not
clustNo	If estK is false - Give desired cluster number
nStart	Minimum cells per cluster
Current	R session

Value

Returns a list containing a Seurat object with SC3-produced clustering data and tSNE plot

dbdimitrov/BugleSeq documentation built on July 17, 2021, 1:02 p.m.