clean_records: Creating a summary file of counts of germplasm, herbarium and...

In dcarver1/gapAnalysisR: An R package to calculate conservation indicators using species distribution models

Description

Creates a summary file of counts of germplasm, herbarium as well split records in csv files per species to allow calculate all indicators provided by GapAnalysisR R package

Usage

clean_records(Workspace, species_csv, species_list, run_version)

Arguments

Workspace	A forder where the pipeline will be executed
species_csv	CSV file name located at /Workspace/parameters/input to be splitted
species_list	A list of species to be analyzed
run_version	The version of the analysis used (e.g 'v1')

Value

It returns a raster file saved in /Workspace/parameters/input to be used to calculate ex-situ conservation indicators

References

Khoury, C. K., Amariles, D., Soto, J. S., Diaz, M. V., Sotelo, S., Sosa, C. C., … Jarvis, A. (2019). Comprehensiveness of conservation of useful wild plants: An operational indicator for biodiversity and sustainable development targets. Ecological Indicators. https://doi.org/10.1016/j.ecolind.2018.11.016

Examples

clean_records(Workspace,species_csv,species_list,run_version)

 dir  <-  'E:/CIAT/workspace/Workspace_test'
 run_version  <- 'v1'
 species_csv <- 'Cucurbita_CWR_2019_09_30.csv'

 x <- clean_records(Workspace,species_csv,species_list,run_version)

dcarver1/gapAnalysisR documentation built on Feb. 29, 2020, 12:13 p.m.