Description Usage Arguments Value Author(s) Examples
Calculates Area of occupancy (AOO) Area and extent of occurrence (EOO) in km2 using a species distribution model, an occurrences CSV file and categorize the species conservation status according IUCN parameters
1 | eooAoo(species, Workspace, run_version)
|
species |
A name species compiled using '_' to call occurrences files from Workspace/parameter/occurrences folder |
Workspace |
A forder where the pipeline will be executed |
run_version |
The version of the analysis used (e.g 'v1') |
It returns a data frame file saved at gap_analysis folder with six columns:
taxon | Species name |
EOO Area km2 | Area of occupancy in km^2 (AOO) for a given species |
EOO Status | IUCN conservation using (AOO) |
AOO | extent of occurrence (EOO) in km2 for a given species |
AOO adjusted Minimum | Minimum adjusted polygon for AOO for a given species |
AOO Status | IUCN conservation using (AOO) |
Dan Carver
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 | eooAoo('Cucurbita_digitata',Workspace,'v1')
Workspace <- 'E:/CIAT/workspace/Workspace_test/workspace'
run_version <- 'v1'
species_list <- c('Cucurbita_cordata',
'Cucurbita_digitata',
'Cucurbita_foetidissima',
'Cucurbita_palmata')
run_version <-'v1'
lapply(1:length(species_list),function(i){
species <- species_list[[i]]
x <- eooAoo(species,Workspace,run_version)
print(paste0(species,' DONE!'))
})
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