plotTrail: Visualize single trails

In dcellwanger/CellTrails: Reconstruction, visualization and analysis of branching trajectories

Description

Method highlights a single trail on the trajectory map

Usage

plotTrail(sce, name)

Arguments

sce	A SingleCellExperiment object
name	Name of the trail

Details

A trail can be defined with the function addTrail between two landmarks. User-defined landmarks can be set with the function userLandmarks. This function visualizes the start and endpoints, and the pseudotime of a defined trail along the trajectory. The trail pseudotimes can be directly accessed via the trails.

An error is thrown if the trail_name is unknown. The function is case-sensitiv. All available trails can be listed by trailNames.

Value

A ggplot object

Author(s)

Daniel C. Ellwanger

See Also

addTrail userLandmarks trailNames trails

Examples

# Example data
data(exSCE)

# Plot trail
plotTrail(exSCE, name="Tr1")

dcellwanger/CellTrails documentation built on May 12, 2020, 2:01 a.m.