selectTrajectory: Select component from trajectory graph
In dcellwanger/CellTrails: Reconstruction, visualization and analysis of branching trajectories
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
Description
Retains a single component of a trajectory graph.
Usage
1
selectTrajectory(sce, component)
Arguments
sce
A SingleCellExperiment object
component
Number of component to be selected
Details
The construction of a trajectory graph may result in a forest
having multiple tree components, which may represent individual
trajectories or isolated nodes. This method should be used to extract a
single component from the graph. A component is
identified by its (integer) number.
Diagnostic messages
An error is thrown if the states have not been connected yet;
function connectStates needs to be called first. An
error is thrown if an unknown component (number) is selected.
Value
An updated SingleCellExperiment object
Author(s)
Daniel C. Ellwanger
See Also
Examples
1
2
3
4
5
# Example data
data(exSCE)
# Select trajectory
exSCE <- selectTrajectory(exSCE, component=1)
dcellwanger/CellTrails documentation built on May 12, 2020, 2:01 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value Author(s) See Also Examples
Description
Retains a single component of a trajectory graph.
Usage
1 | selectTrajectory(sce, component)
|
Arguments
sce |
A |
component |
Number of component to be selected |
Details
The construction of a trajectory graph may result in a forest
having multiple tree components, which may represent individual
trajectories or isolated nodes. This method should be used to extract a
single component from the graph. A component is
identified by its (integer) number.
Diagnostic messages
An error is thrown if the states have not been connected yet;
function connectStates needs to be called first. An
error is thrown if an unknown component (number) is selected.
Value
An updated SingleCellExperiment object
Author(s)
Daniel C. Ellwanger
See Also
Examples
1 2 3 4 5 | # Example data
data(exSCE)
# Select trajectory
exSCE <- selectTrajectory(exSCE, component=1)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.