userLandmarks-set: SET user-defined landmarks

In dcellwanger/CellTrails: Reconstruction, visualization and analysis of branching trajectories

Description

Set user-defined landmarks to a SingleCellExperiment object.

Usage

userLandmarks(object) <- value

Arguments

object	A SingleCellExperiment object
value	A character vector with sample names

Details

Landmarks can be defined on the trajectory and can be necessary to extract individual trails from a trajectory.

Diagnostic messages

An error is thrown if the trajectory has not been reconstructed yet.

Value

An updated SingleCellExperiment object

Author(s)

Daniel C. Ellwanger

See Also

SingleCellExperiment fitTrajectory

Examples

# Example data
data(exSCE)

# Set landmarks
userLandmarks(exSCE) <- colnames(exSCE)[5:7]

dcellwanger/CellTrails documentation built on May 12, 2020, 2:01 a.m.