userLandmarks-set: SET user-defined landmarks

Description Usage Arguments Details Value Author(s) See Also Examples

Description

Set user-defined landmarks to a SingleCellExperiment object.

Usage

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userLandmarks(object) <- value

Arguments

object

A SingleCellExperiment object

value

A character vector with sample names

Details

Landmarks can be defined on the trajectory and can be necessary to extract individual trails from a trajectory.

Diagnostic messages

An error is thrown if the trajectory has not been reconstructed yet.

Value

An updated SingleCellExperiment object

Author(s)

Daniel C. Ellwanger

See Also

SingleCellExperiment fitTrajectory

Examples

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# Example data
data(exSCE)

# Set landmarks
userLandmarks(exSCE) <- colnames(exSCE)[5:7]

dcellwanger/CellTrails documentation built on May 12, 2020, 2:01 a.m.