Files in ddiez/motiftools
Tools to analyze sequence motifs
.Rbuildignore
.gitattributes
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/test-coverage.yaml
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/RcppExports.R
R/alignment.R
R/architecture.R
R/catch-routine-registration.R
R/class.R
R/fimo.R
R/mast.R
R/meme.R
R/misc.R
R/motif.R
R/motiftools-package.R
R/plot.R
R/sequence.R
R/tomtom.R
README.Rmd
README.md
_pkgdown.yml
data-raw/DATASET.R
data-raw/fimo_ras/cisml.xml
data-raw/fimo_ras/fimo.gff
data-raw/fimo_ras/fimo.html
data-raw/fimo_ras/fimo.txt
data-raw/fimo_ras/fimo.xml
data-raw/mast_ras/mast.html
data-raw/mast_ras/mast.txt
data-raw/mast_ras/mast.xml
data-raw/meme_ras/logo1.eps
data-raw/meme_ras/logo2.eps
data-raw/meme_ras/logo3.eps
data-raw/meme_ras/logo4.eps
data-raw/meme_ras/logo5.eps
data-raw/meme_ras/logo6.eps
data-raw/meme_ras/logo7.eps
data-raw/meme_ras/logo8.eps
data-raw/meme_ras/logo9.eps
data-raw/meme_ras/meme.html
data-raw/meme_ras/meme.txt
data-raw/meme_ras/meme.xml
data-raw/ras.faln
data-raw/ras.fasta
data-raw/ras.tree
data-raw/tomtom_ras/tomtom.html
data-raw/tomtom_ras/tomtom.txt
data-raw/tomtom_ras/tomtom.xml
docs/articles/index.html
docs/articles/introduction.html
docs/articles/introduction_files/figure-html/unnamed-chunk-3-1.png
docs/articles/introduction_files/figure-html/unnamed-chunk-3-2.png
docs/articles/introduction_files/figure-html/unnamed-chunk-3-3.png
docs/articles/introduction_files/figure-html/unnamed-chunk-3-4.png
docs/articles/introduction_files/figure-html/unnamed-chunk-3-5.png
docs/articles/introduction_files/figure-html/unnamed-chunk-4-1.png
docs/articles/introduction_files/figure-html/unnamed-chunk-4-2.png
docs/articles/introduction_files/figure-html/unnamed-chunk-5-1.png
docs/authors.html
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/reference/MotifCompareResult-class.html
docs/reference/MotifSearchResult-class.html
docs/reference/align.html
docs/reference/conservationMatrix-methods.html
docs/reference/dcor.html
docs/reference/getMotifMatrix-methods.html
docs/reference/index.html
docs/reference/motifAlign.html
docs/reference/motiftools-package.html
docs/reference/plotConservationMatrix-methods.html
docs/reference/plotMotifMatches.html
docs/reference/plotMotifMatrix-methods.html
docs/reference/readFIMO.html
docs/reference/readMAST.html
docs/reference/readMEME.html
docs/reference/readTOMTOM.html
inst/files/cisml.xml
inst/files/fimo.xml
inst/files/mast.xml
inst/files/meme.xml
inst/files/ras.faln
inst/files/ras.tree
inst/files/tomtom.xml
man/MotifCompareResult-class.Rd
man/MotifSearchResult-class.Rd
man/align.Rd
man/conservationMatrix-methods.Rd
man/dcor.Rd
man/eud.Rd
man/getMotifArchSimilarity.Rd
man/getMotifArchString.Rd
man/getMotifCoverage-methods.Rd
man/getMotifMatrix-methods.Rd
man/getMotifSimilarity.Rd
man/getMotifTotalCoverage-methods.Rd
man/getMotifsBySeq.Rd
man/motifAlign.Rd
man/motiftools-package.Rd
man/plotConservationMatrix-methods.Rd
man/plotMotifArchSimilarity.Rd
man/plotMotifMatches.Rd
man/plotMotifMatrix-methods.Rd
man/readFIMO.Rd
man/readMAST.Rd
man/readMEME.Rd
man/readTOMTOM.Rd
motiftools.Rproj
src/.gitignore
src/Makevars
src/RcppExports.cpp
src/align_nw.cpp
src/align_sw.cpp
src/misc.cpp
src/misc.h
src/test-misc.cpp
src/test-runner.cpp
tests/testthat.R
tests/testthat/test-cpp.R
tests/testthat/test_align.R
tests/testthat/test_arch.R
tests/testthat/test_coverage.R
tests/testthat/test_fimo.R
tests/testthat/test_mast.R
tests/testthat/test_meme.R
tests/testthat/test_misc.R
tests/testthat/test_sequence.R
tests/testthat/test_tomtom.R
vignettes/introduction.Rmd
