getMotifMatrix-methods: getMotifMatrix
In ddiez/motiftools: Tools to analyze sequence motifs
Description
Usage
Arguments
Value
Examples
Description
Obtain a congintency matrix with the number of motifs per sequence. Alterna-
tivelly return only presence/absence of motif, and/or only motifs/sequences
with at least one non-zero entry.
Usage
1
2
3
4
getMotifMatrix(object, simplify = TRUE, filter = FALSE)
## S4 method for signature 'MotifSearchResult'
getMotifMatrix(object, simplify = TRUE, filter = FALSE)
Arguments
object
a MotifSearchResult object.
simplify
whether to return a matrix of 0 (motif not present) and 1 (motif present).
filter
whether remove columns/rows with all zero entries.
Value
a matrix.
Examples
1
ddiez/motiftools documentation built on May 8, 2020, 11:38 a.m.
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Description Usage Arguments Value Examples
Description
Obtain a congintency matrix with the number of motifs per sequence. Alterna- tivelly return only presence/absence of motif, and/or only motifs/sequences with at least one non-zero entry.
Usage
1 2 3 4 | getMotifMatrix(object, simplify = TRUE, filter = FALSE)
## S4 method for signature 'MotifSearchResult'
getMotifMatrix(object, simplify = TRUE, filter = FALSE)
|
Arguments
object |
a MotifSearchResult object. |
simplify |
whether to return a matrix of 0 (motif not present) and 1 (motif present). |
filter |
whether remove columns/rows with all zero entries. |
Value
a matrix.
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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