motifAlign: Align two motifs represented as PWMs
In ddiez/motiftools: Tools to analyze sequence motifs
Description
Usage
Arguments
Value
Examples
Description
Takes to motifs represented by PWMs and computes an alignment using some
measure of motif similarity as scoring method. By default this is Pearson
Correlation Coefficient (PCC). Alternatively can be Euclidean distance.
Usage
1
motifAlign(x1, x2, align.method = "local", score.method = "PCC", debug = FALSE)
Arguments
x1
motif 1.
x2
motif 2.
align.method
align method, one of "global" or "local" (default = local).
score.method
scoring method, one of "PCC" or "euclid" (default = PCC).
debug
logical; whether to show debugging information.
Value
AlignResult object.
Examples
1
ddiez/motiftools documentation built on May 8, 2020, 11:38 a.m.
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Description Usage Arguments Value Examples
Description
Takes to motifs represented by PWMs and computes an alignment using some measure of motif similarity as scoring method. By default this is Pearson Correlation Coefficient (PCC). Alternatively can be Euclidean distance.
Usage
1 | motifAlign(x1, x2, align.method = "local", score.method = "PCC", debug = FALSE)
|
Arguments
x1 |
motif 1. |
x2 |
motif 2. |
align.method |
align method, one of "global" or "local" (default = local). |
score.method |
scoring method, one of "PCC" or "euclid" (default = PCC). |
debug |
logical; whether to show debugging information. |
Value
AlignResult object.
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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