plotMotifMatrix-methods: plotMotifMatrix

In ddiez/motiftools: Tools to analyze sequence motifs

Description

Plot a heatmap with motif counts per sequence and associated tree and barplots with motif-wise percentages.

Usage

plotMotifMatrix(object, ...)

## S4 method for signature 'list'
plotMotifMatrix(
  object,
  tree,
  fill,
  color = "transparent",
  annot = NULL,
  annot.fill = NULL,
  bar.percentage = TRUE,
  show.tips = FALSE
)

## S4 method for signature 'MotifSearchResult'
plotMotifMatrix(object, ...)

## S4 method for signature 'matrix'
plotMotifMatrix(object, ...)

Arguments

object	a matrix object or list of matrix objects.
...	arguments passed down to methods.
tree	a tree object.
fill	color used for tiles.
color	color for tile borders.
annot	list of matrices containing annotations.
annot.fill	list of character vectors with fill colors for annotation matrices.
bar.percentage	logical; whether to show percentages in bar plot (default: TRUE).
show.tips	logical; whether to show the sequence names near the tree tips.

Value

Returns a grob object invisibly.

Examples

NULL

ddiez/motiftools documentation built on May 8, 2020, 11:38 a.m.