Man pages for ddiez/motiftools
Tools to analyze sequence motifs
| align | Align two sequences |
| conservationMatrix-methods | Compute the conservation score matrix from a MSA |
| dcor | dcor |
| eud | Euclidean distance |
| getMotifArchSimilarity | getMotifArchSimilarity |
| getMotifArchString | getMotifArchString |
| getMotifCoverage-methods | getMotifCoverage |
| getMotifMatrix-methods | getMotifMatrix |
| getMotifsBySeq | getMotifsBySeq |
| getMotifSimilarity | getMotifSimilarity |
| getMotifTotalCoverage-methods | getMotifTotalCoverage |
| motifAlign | Align two motifs represented as PWMs |
| MotifCompareResult-class | MotifCompareResult-class |
| MotifSearchResult-class | MotifSearchResult-class |
| motiftools-package | motiftools: Tools to analyze sequence motifs |
| plotConservationMatrix-methods | Plots a heatmap with the conservation score for each residue |
| plotMotifArchSimilarity | plotMotifArchSimilarity |
| plotMotifMatches | plotMotifMatches |
| plotMotifMatrix-methods | plotMotifMatrix |
| readFIMO | Read results from FIMO motif search stored in XML format. |
| readMAST | Read results from MAST motif search stored in XML format. |
| readMEME | Read results from MEME motif search stored in XML format. |
| readTOMTOM | readTOMTOM |
