knitr::opts_chunk$set(echo = TRUE) set.seed({{format(Sys.Date(), format = "%Y%m%d")}})
library(biostatR); library(tidyverse) # setting MSK ggplot theme, color palette, and gtsummary theme theme_set(mskRvis::theme_biostat()); mskRvis::set_msk_palette() {{(ifelse(tolower(Sys.info()[["user"]]) %in% eval(as.list(bstfun::theme_gtsummary_msk)$name), glue::glue("theme_gtsummary_msk('{tolower(Sys.info()[['user']])}')"), "theme_gtsummary_compact()"))}} here_data() # current path to data # example code for importing excel file df_raw_data <- readxl::read_excel( path = here_data("Raw Data from PI.xlsx") ) %>% janitor::clean_names(case = "all_caps") %>% # uppercase col names mutate(across(where(lubridate::is.POSIXt), lubridate::as_date)) # use lubridates
# applying variable labels, and dropping raw variables df_main <- df_main %>% set_derived_variables(path = here::here("scripts/derived_variables.xlsx")) # overview of master analytic dataset skimr::skim(df_main) # saving master analytic data set saveRDS( object = df_main, file = here_data("df_main.Rds") )
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.